Software Installs
Information on how to install some commonly used software and tools.
Bash
Conda (miniconda)
Install miniconda, not Anaconda.
This will also install Python, so if you wish to use a specific version of Python, you with want to specify that specific version when installing.
Git
Jupyter
I recommend installing through conda
. See the conda
install above first if you need to install conda
, then follow the instructions below.
OS | Instructions |
---|---|
Windows | https://jupyter.org/install |
macOS | https://jupyter.org/install |
Linux | https://jupyter.org/install |
Posit (formerly Rstudio)
OS | Instructions |
---|---|
Windows | https://posit.co/downloads/ |
macOS | https://posit.co/downloads/ |
Linux | https://posit.co/downloads/ |
Python
Python will also come installed with conda
(depending on the installer that is used, I think). Choose the Python version that most of your packages will need. If you are unsure, I would start with Python 3.
R
Snakemake
I recommend installing this through conda
. See the conda
install above to first install conda
, then follow the instructions below. I also recommend installing through mamba
if possible.